Match details
Record ID: |
LR537504.1 |
Database: |
nt |
Go to original record |
Description: |
Brachypodium hybridum genome assembly, organelle: plastid:chloroplast |
Taxon: |
Brachypodium hybridum |
Original size: |
135423 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46612 |
47228 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tagtatggaa
51 acctgctaag tgttaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg ggttctcgaa
151 ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg agttaattta attaggttgt tttggtagtg gaactccttt
251 taaattagag aaagaaggga ttgttacatc taataaacac gtatagatac
301 taacatacta aacgattaat cacagaatct atagtataac ataggttctt
351 tattcttttt tagaatgaaa ttaggaagga ttatgaaata aaaaattaat
401 aaatttttta gaattattgt gaatccattc taattgaatc ttgagtaatc
451 aaatccttca attcaaagta cttgagatct tttaaaaagt ggattaatcg
501 gacgaggaca aagagagagt cccattctac atgtcaatac tgacaacaat
551 gaaatttcga gtaaaaggaa aatccgtcga ctttataagt tgtgagggtt
601 caagtccctc tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.