Amplicon details

Amplicon:

617 bp
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tagtatggaa
51    acctgctaag tgttaacttc caaattcaga gaaaccctgg aattaaaaaa
101   gggcaatcct gagccaaatc cgtgttttga gaaaacaagg ggttctcgaa
151   ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201   taacgaatcg agttaattta attaggttgt tttggtagtg gaactccttt
251   taaattagag aaagaaggga ttgttacatc taataaacac gtatagatac
301   taacatacta aacgattaat cacagaatct atagtataac ataggttctt
351   tattcttttt tagaatgaaa ttaggaagga ttatgaaata aaaaattaat
401   aaatttttta gaattattgt gaatccattc taattgaatc ttgagtaatc
451   aaatccttca attcaaagta cttgagatct tttaaaaagt ggattaatcg
501   gacgaggaca aagagagagt cccattctac atgtcaatac tgacaacaat
551   gaaatttcga gtaaaaggaa aatccgtcga ctttataagt tgtgagggtt
601   caagtccctc tatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
LR537504.1 nt Brachypodium hybridum genome assemb... 135423 bp Brachypodium hybridum QL-PLN-00-007 617 bp View
LR537506.1 nt Brachypodium hybridum genome assemb... 135145 bp Brachypodium hybridum QL-PLN-00-007 617 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.