Match details
Record ID: |
LR537508.1 |
Database: |
nt |
Go to original record |
Description: |
Brachypodium hybridum genome assembly, organelle: plastid:chloroplast |
Taxon: |
Brachypodium hybridum |
Original size: |
136328 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46609 |
47220 |
+ |
612 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tagtatggaa
51 acctgctaag tgttaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg ggttctcgaa
151 ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg agttaattag gttgttttgg tagtggaact cctttaaaat
251 tagagaaaga agggatttat acatctaata aacacgtata gatactaaca
301 tagcaaacga ttaatcacag aatctatagt ataacatagg ttctttattc
351 ttttttagaa tgaaattagg aaggattatg aaataaaaat tgaataaatt
401 ttttagaatt attgtgaatc cattctaatt gaatcttgag taatcaaatc
451 cttcaattta aagtactcga gatcttttaa aaagtggatt aatcggacga
501 ggacaaagag agagtcccat tctacatgtc aatactgaca acaatgaaat
551 ttcgagtaaa aggaaaatcc gtcgacttta taagttgtga gggttcaagt
601 ccctctatcc cc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
612 |
593 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.