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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY999951.1 nt Festuca sinensis isolate 84 tRNA-Le... 1025 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999952.1 nt Festuca sinensis isolate 99 tRNA-Le... 1023 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999953.1 nt Festuca sinensis isolate 111 tRNA-L... 1022 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999954.1 nt Festuca kryloviana isolate 120 tRNA... 1021 bp Festuca kryloviana QL-PLN-00-007 619 bp View
KY999955.1 nt Festuca sinensis isolate 141 tRNA-L... 1024 bp Festuca sinensis QL-PLN-00-007 619 bp View
LC160131.1 nt Miscanthus sinensis chloroplast DNA... 141416 bp Miscanthus sinensis QL-PLN-00-007 526 bp View
LC199758.1 nt Primula takedana chloroplast DNA, t... 1027 bp Primula takedana QL-PLN-00-007 591 bp View
LC206360.1 nt Oxalis sp. AOKI2016 chloroplast gen... 986 bp Oxalis sp. AOKI2016 QL-PLN-00-007 568 bp View
LC206372.1 nt Oxalis sp. AOKI2016 chloroplast gen... 979 bp Oxalis sp. AOKI2016 QL-PLN-00-007 568 bp View
LC206373.1 nt Oxalis acetosella chloroplast gene ... 990 bp Oxalis acetosella QL-PLN-00-007 569 bp View
LC206375.1 nt Oxalis griffithii subsp. griffithii... 954 bp Oxalis griffithii subsp. griffithii QL-PLN-00-007 568 bp View
LC206391.1 nt Oxalis acetosella chloroplast gene ... 981 bp Oxalis acetosella QL-PLN-00-007 568 bp View
LC206393.1 nt Oxalis griffithii subsp. griffithii... 989 bp Oxalis griffithii subsp. griffithii QL-PLN-00-007 568 bp View
LC206394.1 nt Oxalis griffithii subsp. griffithii... 988 bp Oxalis griffithii subsp. griffithii QL-PLN-00-007 568 bp View
LC206401.1 nt Oxalis sp. AOKI2016 chloroplast gen... 979 bp Oxalis sp. AOKI2016 QL-PLN-00-007 568 bp View
LC589449.1 nt Phyllostachys angusta GWHAOSF010000... 139678 bp Phyllostachys angusta QL-PLN-00-007 614 bp View
LC590825.1 nt Schizostachyum dumetorum var. xinwu... 139230 bp Schizostachyum dumetorum var. xinwuense QL-PLN-00-007 613 bp View
LC590826.1 nt Phyllostachys nidularia f. farcta 2... 139706 bp Phyllostachys nidularia f. farcta QL-PLN-00-007 614 bp View
LC603789.1 nt Musa acuminata cv. Formosana chloro... 170299 bp Musa acuminata QL-PLN-00-007 594 bp View
LC609620.1 nt Musa acuminata cv. Kluai Khai chlor... 170037 bp Musa acuminata QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.