Match details
Record ID: |
LC206401.1 |
Database: |
nt |
Go to original record |
Description: |
Oxalis sp. AOKI2016 chloroplast gene for tRNA-Leu, trnL-trnF intergenic spacer, partial sequence, isolate: 434. |
Taxon: |
Oxalis sp. AOKI2016 |
Original size: |
979 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
5 |
572 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ctcttttccg aaaacaaaca aagttttcga
151 aagcgagaat aaaaaaggat aggtgcagag actcaacgga agctattcta
201 aaatttaaaa atagatttta ctgcgttgcg ttagtaaata aacccttccc
251 tcaaaattct agaaaggata aacctatata catacgtata cgtactgaaa
301 tactatttca aatgattaat gatgacccaa atctgtatta tttatcaaaa
351 aaatgaaaga tttgttgtga atcgattcca agttgaagaa agaatcgaat
401 gataattgat caaatcattc actccagtgt cggatagatc ttttgaaaaa
451 cggatagaat aaagatagag tcccattcta catgtcaata ttgacaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttagaaa tcgtgagggt
551 tcaagtccct ctatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.