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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY972886.1 nt Vatica micrantha isolate 01-0092 tR... 1805 bp Vatica micrantha QL-PLN-00-007 560 bp View
KY972887.1 nt Vatica micrantha isolate 01-0178 tR... 1804 bp Vatica micrantha QL-PLN-00-007 560 bp View
KY972888.1 nt Vatica cf. oblongifolia JH-2017 iso... 1854 bp Vatica cf. oblongifolia JH-2017 QL-PLN-00-007 580 bp View
KY972889.1 nt Vatica cf. oblongifolia JH-2017 iso... 1853 bp Vatica cf. oblongifolia JH-2017 QL-PLN-00-007 580 bp View
KY972890.1 nt Vatica oblongifolia subsp. multiner... 1740 bp Vatica oblongifolia subsp. multinervosa QL-PLN-00-007 581 bp View
KY972892.1 nt Vatica oblongifolia subsp. oblongif... 1853 bp Vatica oblongifolia subsp. oblongifolia QL-PLN-00-007 580 bp View
KY972893.1 nt Vatica odorata subsp. mindanensis i... 1831 bp Vatica odorata subsp. mindanensis QL-PLN-00-007 580 bp View
KY972894.1 nt Vatica sarawakensis isolate 10-3487... 1825 bp Vatica sarawakensis QL-PLN-00-007 580 bp View
KY972895.1 nt Vatica sarawakensis isolate 10-3744... 1826 bp Vatica sarawakensis QL-PLN-00-007 580 bp View
KY972896.1 nt Vatica vinosa isolate 01-0248 tRNA-... 1819 bp Vatica vinosa QL-PLN-00-007 581 bp View
KY972897.1 nt Vatica vinosa isolate 01-0265 tRNA-... 1819 bp Vatica vinosa QL-PLN-00-007 580 bp View
KY987085.1 nt Poa abbreviata voucher CAN:Gillespi... 1794 bp Poa abbreviata QL-PLN-00-007 611 bp View
KY987088.1 nt Poa attenuata voucher CAN:Olonova 2... 1794 bp Poa attenuata QL-PLN-00-007 611 bp View
KY987089.1 nt Poa biebersteinii voucher CAN:Gille... 1794 bp Poa biebersteinii QL-PLN-00-007 611 bp View
KY987090.1 nt Poa dahurica voucher CAN:Olonova 20... 1794 bp Poa dahurica QL-PLN-00-007 611 bp View
KY987093.1 nt Poa glauca voucher US:Soreng 7965 t... 1794 bp Poa glauca QL-PLN-00-007 611 bp View
KY987094.1 nt Poa glauca subsp. glauca voucher US... 1794 bp Poa glauca subsp. glauca QL-PLN-00-007 611 bp View
KY987095.1 nt Poa hartzii subsp. hartzii voucher ... 1784 bp Poa hartzii subsp. hartzii QL-PLN-00-007 611 bp View
KY987096.1 nt Poa hylobates voucher US:Soreng 563... 1794 bp Poa hylobates QL-PLN-00-007 611 bp View
KY987098.1 nt Poa laxa subsp. fernaldiana voucher... 1795 bp Poa laxa subsp. fernaldiana QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.