Match details
Record ID: |
KY972890.1 |
Database: |
nt |
Go to original record |
Description: |
Vatica oblongifolia subsp. multinervosa isolate 08-2601 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; plastid. |
Taxon: |
Vatica oblongifolia subsp. multinervosa |
Original size: |
1740 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
751 |
1331 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaattg tattgagcct tagtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aaaaaaaaaa
101 gggcaatcct gagccaaatc ctgtttaagt tcaaaaagaa ataggatagg
151 tgcagagact caatggaagt tgttcgaaca aatggggttg actgcttttg
201 cgttggtaaa agaatacttc tatcgaaact tcagcaagga taaacatata
251 gaatacataa tgaaaaaact atttcaaaaa agacgactgg gacacctatt
301 cttttgattt ctattttttt ataggttata gcaaaaagaa ttatatgaaa
351 aatcaaaaga atccttgtga atcgatttca aattgaagaa agaatcaaat
401 agaatattca ctaatcaaac aattcactcc atagtctgat aaatcaatgg
451 attaattgga cgagaataaa gatagagtcc cattctacat gtcaatatca
501 ataccgacaa caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.