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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY174338.1 nt Carpinus tientaiensis chloroplast, ... 160104 bp Carpinus tientaiensis QL-PLN-00-007 606 bp View
KY189293.1 nt Stephania longipes isolate S2014047... 912 bp Stephania longipes QL-PLN-00-007 577 bp View
KY348833.1 nt Bertiera longithyrsa chloroplast, p... 128726 bp Bertiera longithyrsa QL-PLN-00-007 569 bp View
KY348835.1 nt Gardenia conferta chloroplast, part... 128862 bp Gardenia conferta QL-PLN-00-007 567 bp View
KY348836.1 nt Stachyarrhena heterochroa chloropla... 129580 bp Stachyarrhena heterochroa QL-PLN-00-007 567 bp View
KY348837.1 nt Mitriostigma axillare chloroplast, ... 128365 bp Mitriostigma axillare QL-PLN-00-007 569 bp View
KY348838.1 nt Paragenipa lancifolia chloroplast, ... 129378 bp Paragenipa lancifolia QL-PLN-00-007 572 bp View
KY348839.1 nt Alberta magna chloroplast, partial ... 129338 bp Alberta magna QL-PLN-00-007 567 bp View
KY348840.1 nt Boholia nematostylis chloroplast, p... 129227 bp Boholia nematostylis QL-PLN-00-007 570 bp View
KY363366.1 nt Alopecurus gerardii voucher US:Sore... 1773 bp Alopecurus gerardii QL-PLN-00-007 618 bp View
KY363367.1 nt Alopecurus gerardii voucher US:Sore... 1799 bp Alopecurus gerardii QL-PLN-00-007 618 bp View
KY363368.1 nt Alopecurus goekyigitiana voucher US... 1769 bp Alopecurus goekyigitiana QL-PLN-00-007 619 bp View
KY378663.1 nt Ixora hookeri chloroplast, partial ... 128306 bp Ixora hookeri QL-PLN-00-007 565 bp View
KY378664.1 nt Greenea oblonga chloroplast, partia... 128758 bp Greenea oblonga QL-PLN-00-007 566 bp View
KY378665.1 nt Glionnetia sericea chloroplast, par... 128877 bp Glionnetia sericea QL-PLN-00-007 558 bp View
KY378666.1 nt Psydrax obovata chloroplast, partia... 126993 bp Psydrax obovata QL-PLN-00-007 542 bp View
KY378667.1 nt Trailliaedoxa gracilis chloroplast,... 126943 bp Trailliaedoxa gracilis QL-PLN-00-007 565 bp View
KY378668.1 nt Scyphiphora hydrophyllacea chloropl... 129262 bp Scyphiphora hydrophyllacea QL-PLN-00-007 566 bp View
KY378669.1 nt Jackiopsis ornata chloroplast, part... 128852 bp Jackiopsis ornata QL-PLN-00-007 565 bp View
KY378672.1 nt Ixora parviflora chloroplast, parti... 128868 bp Ixora parviflora QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.