Match details
Record ID: |
KY378669.1 |
Database: |
nt |
Go to original record |
Description: |
Jackiopsis ornata chloroplast, partial genome. |
Taxon: |
Jackiopsis ornata |
Original size: |
128852 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47677 |
48241 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa gggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaagtgaa agataaacgt atatacgtat tgaatactat atcaaatgat
301 taatgacgac tcgactgaat ctgtattttt tatatgaaaa tggaagaatt
351 ggtgtgaata gattccacat tgaagaaaga atcgaatatt cattgattaa
401 acgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451 cgagaataaa gatagagtcc cgttctacgt gtcaatgtcg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttacaaatcg tgagggttca
551 agtccctcta tcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.