Match details
Record ID: |
KY363368.1 |
Database: |
nt |
Go to original record |
Description: |
Alopecurus goekyigitiana voucher US:Soreng 8856 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Alopecurus goekyigitiana |
Original size: |
1769 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
815 |
1433 |
+ |
619 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaagggggtt ctcgaactag
151 aatacaaagg aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 gaatcgagtt aattatgttg tgttgttagt ggaattcctt ctaaattcga
251 gaaagaaggg ctttatacat ctaataaaca cgtatagata ctgacatagc
301 aaacgattaa tcacagaacc tatctatatt ataatatatg gttctttatt
351 cttttttaga atgaaataga aatgattatg aaataaaaaa ttcataattt
401 tttttttaga attattgtga atacattcca atcgaatatt tagtaatcaa
451 atgctttaat tcaaagtttt gaggtcttta atttaaaaaa gtggattaat
501 cggacgagga caaagagaga gtcccattct acatgtcaat actgacaaca
551 atgaaatttc tagtaaaagg aaaatccgtc gactttataa gtcgtgaggg
601 ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
619 |
600 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.