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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KX078557.1 nt Rhodiola rosea genotype Tsukts tRNA... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078558.1 nt Rhodiola rosea genotype Unteralp tR... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078560.1 nt Rhodiola rosea genotype Val de Nomn... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078561.1 nt Rhodiola rosea genotype Varanger tR... 963 bp Rhodiola rosea QL-PLN-00-007 604 bp View
KX078562.1 nt Rhodiola rosea genotype Wales tRNA-... 944 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078563.1 nt Rhodiola rosea genotype Yakutia tRN... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX085496.1 nt Oryza eichingeri chloroplast, compl... 134821 bp Oryza eichingeri QL-PLN-00-007 615 bp View
KX085497.1 nt Oryza rhizomatis chloroplast, compl... 134796 bp Oryza rhizomatis QL-PLN-00-007 615 bp View
KX085498.1 nt Fagopyrum tataricum cultivar Miqiao... 159272 bp Fagopyrum tataricum QL-PLN-00-007 577 bp View
KX094399.1 nt Amaranthus tricolor chloroplast, co... 150027 bp Amaranthus tricolor QL-PLN-00-007 604 bp View
KX118751.1 nt Poa bactriana subsp. glabriflora vo... 1759 bp Poa bactriana subsp. glabriflora QL-PLN-00-007 563 bp View
KX118752.1 nt Poa bucharica voucher US:Soreng et ... 1810 bp Poa bucharica QL-PLN-00-007 618 bp View
KX118762.1 nt Poa iconia var. pelasgis voucher CA... 1777 bp Poa iconia var. pelasgis QL-PLN-00-007 611 bp View
KX118763.1 nt Poa iconia var. pelasgis voucher CA... 1778 bp Poa iconia var. pelasgis QL-PLN-00-007 611 bp View
KX118766.1 nt Poa sinaica var. sinaica voucher US... 1758 bp Poa sinaica var. sinaica QL-PLN-00-007 563 bp View
KX118767.1 nt Poa sinaica var. vivipara voucher C... 1758 bp Poa sinaica var. vivipara QL-PLN-00-007 563 bp View
KX147312.1 nt Coccinia grandis voucher M:Sousa an... 157035 bp Coccinia grandis QL-PLN-00-007 586 bp View
KX229727.1 nt Phragmites australis voucher RSA:D.... 137612 bp Phragmites australis QL-PLN-00-007 617 bp View
KX347245.1 nt Lilium brownii var. viridulum chlor... 152659 bp Lilium brownii var. viridulum QL-PLN-00-007 608 bp View
KX373096.1 nt Denisophytum madagascariense vouche... 1077 bp Denisophytum madagascariense QL-PLN-00-007 604 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.