Match details
Record ID: |
KX347245.1 |
Database: |
nt |
Go to original record |
Description: |
Lilium brownii var. viridulum chloroplast, complete genome. |
Taxon: |
Lilium brownii var. viridulum |
Original size: |
152659 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45104 |
45711 |
+ |
608 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttttaa tataaaacta caataaaaaa agataggtgc agagactcaa
201 tggaagttgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 attcttctat caaaattaca gagaggatgc ccgccctata tacgtatata
301 tacatactga ccatagtaaa cgattgatta atcgcggccc gaatccatta
351 taatatatat atatgaaaaa tttaagagtt attgtaaatc tattccatat
401 tccaatcaaa gtttaaggaa gaatcgaata ttcagtgatc aaattattca
451 ttccagagtc tgtatagatc tttttaaaaa ctgattattc ggacgagaat
501 aaagagagag tcccattcta cgtgtcaata ccgacaacaa tgaaatttat
551 agtaaaagga aaatccgtcg actttataag tcgtgagggt tcaagtccct
601 ctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
608 |
589 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.