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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT279368.1 nt Capillipedium spicigerum isolate 77... 1600 bp Capillipedium spicigerum QL-PLN-00-007 525 bp View
KT279369.1 nt Bothriochloa decipiens isolate 153 ... 1620 bp Bothriochloa decipiens QL-PLN-00-007 525 bp View
KT279370.1 nt Bothriochloa decipiens isolate 290 ... 1588 bp Bothriochloa decipiens QL-PLN-00-007 525 bp View
KT279371.1 nt Bothriochloa decipiens isolate 294 ... 1620 bp Bothriochloa decipiens QL-PLN-00-007 525 bp View
KT279372.1 nt Bothriochloa decipiens isolate 676 ... 1620 bp Bothriochloa decipiens QL-PLN-00-007 525 bp View
KT279373.1 nt Bothriochloa ewartiana isolate 723 ... 1604 bp Bothriochloa ewartiana QL-PLN-00-007 526 bp View
KT279374.1 nt Bothriochloa ewartiana isolate 724 ... 1603 bp Bothriochloa ewartiana QL-PLN-00-007 525 bp View
KT279375.1 nt Bothriochloa bladhii isolate 375 tR... 1582 bp Bothriochloa bladhii QL-PLN-00-007 525 bp View
KT279376.1 nt Bothriochloa bladhii isolate 909 tR... 1582 bp Bothriochloa bladhii QL-PLN-00-007 525 bp View
KT279377.1 nt Bothriochloa bladhii isolate 164 tR... 1582 bp Bothriochloa bladhii QL-PLN-00-007 525 bp View
KT279378.1 nt Bothriochloa bladhii isolate A854 t... 1582 bp Bothriochloa bladhii QL-PLN-00-007 525 bp View
KT279379.1 nt Bothriochloa ischaemum isolate 904 ... 1587 bp Bothriochloa ischaemum QL-PLN-00-007 530 bp View
KT279380.1 nt Bothriochloa ischaemum isolate 861 ... 1587 bp Bothriochloa ischaemum QL-PLN-00-007 530 bp View
KT279381.1 nt Bothriochloa insculpta isolate 165 ... 1582 bp Bothriochloa insculpta QL-PLN-00-007 525 bp View
KT279382.1 nt Bothriochloa macra isolate 266 tRNA... 1549 bp Bothriochloa macra QL-PLN-00-007 525 bp View
KT279383.1 nt Bothriochloa macra isolate 267 tRNA... 1582 bp Bothriochloa macra QL-PLN-00-007 525 bp View
KT279384.1 nt Bothriochloa macra isolate 272 tRNA... 1615 bp Bothriochloa macra QL-PLN-00-007 525 bp View
KT279385.1 nt Bothriochloa macra isolate 273 tRNA... 1582 bp Bothriochloa macra QL-PLN-00-007 525 bp View
KT281148.1 nt Alloteropsis semialata isolate BL c... 139707 bp Alloteropsis semialata QL-PLN-00-007 609 bp View
KT281150.1 nt Alloteropsis semialata isolate JM c... 139732 bp Alloteropsis semialata QL-PLN-00-007 609 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.