Match details
Record ID: |
KT279370.1 |
Database: |
nt |
Go to original record |
Description: |
Bothriochloa decipiens isolate 290 tRNA-Thr gene, partial sequence; trnT-trnL intergenic spacer and tRNA-Leu gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Bothriochloa decipiens |
Original size: |
1588 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
747 |
1271 |
+ |
525 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttt
201 tgtggaatag aagtaataac gcttactcac agaacccata ttataatata
251 ggttctttat tttattttta gaatgaaatt aggaatgatt atgaaataga
301 aaattcataa ttttttgaga attattgtga atctattcca atcgaatatt
351 gagtaatcaa atccttcaat tcattgtttt cgagatcttt taaaaagtgg
401 attaatcgga cgaggataaa gagagagtcc cattctacat gtcaatactg
451 acaacaatga aatttctagt aaaaggaaaa tccgtcgact ttataagtcg
501 tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.36e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
525 |
506 |
2.36e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.