Match details
Record ID: |
KT279379.1 |
Database: |
nt |
Go to original record |
Description: |
Bothriochloa ischaemum isolate 904 tRNA-Thr gene, partial sequence; trnT-trnL intergenic spacer and tRNA-Leu gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Bothriochloa ischaemum |
Original size: |
1587 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
747 |
1276 |
+ |
530 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcac agaacccata ttatattata
251 atataggttc tttattttat ttttagaatg aaattaggaa tgattatgaa
301 atagaaaatt cataattttt tgagaattat tgtgaatcta ttccaatcga
351 atattgagta atcaaatcct tcaattcatt gttttcgaga tcttttaaaa
401 agtggattaa tcggacgagg ataaagagag agtcccattc tacatgtcaa
451 tactgacaac aatgaaattt ctagtaaaaa gaaaatccgt cgactttata
501 agtcgtgagg gttcaagtcc ctctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.38e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
530 |
511 |
2.38e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.