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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 530 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101   gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151   ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201   taacgaatcg aagtaataac gattaatcac agaacccata ttatattata
251   atataggttc tttattttat ttttagaatg aaattaggaa tgattatgaa
301   atagaaaatt cataattttt tgagaattat tgtgaatcta ttccaatcga
351   atattgagta atcaaatcct tcaattcatt gttttcgaga tcttttaaaa
401   agtggattaa tcggacgagg ataaagagag agtcccattc tacatgtcaa
451   tactgacaac aatgaaattt ctagtaaaaa gaaaatccgt cgactttata
501   agtcgtgagg gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT610067.1 nt Dichanthium annulatum isolate TK013... 138116 bp Dichanthium annulatum QL-PLN-00-007 530 bp View
KT279379.1 nt Bothriochloa ischaemum isolate 904 ... 1587 bp Bothriochloa ischaemum QL-PLN-00-007 530 bp View
KT279380.1 nt Bothriochloa ischaemum isolate 861 ... 1587 bp Bothriochloa ischaemum QL-PLN-00-007 530 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.