Match details
Record ID: |
KT281150.1 |
Database: |
nt |
Go to original record |
Description: |
Alloteropsis semialata isolate JM chloroplast, complete genome. |
Taxon: |
Alloteropsis semialata |
Original size: |
139732 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48551 |
49159 |
+ |
609 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttta aaaaataagt ggttgtcaaa
151 ctaaaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg tagtgtaact ccctggaaat
251 tagagaaaga agggcacatc taatacacac gtatagatac tgacatagca
301 aacgattaat cacggaaccc atatcctaat ataggttctt ttttttattt
351 tttagaatga aattaggaat gattatgaaa tagaaaattc tgaatttttt
401 tagaattatt gtgaatccat tccaatcgaa tattgagtaa tcaaatcctt
451 caattcattg ttttcgagat ctttaaaaaa gtggattaat cgaacgagga
501 taaagagaga gtcccattct acatgtcaat actgacaaca atgaaatttc
551 tagtaaaagg aaaatccgtc gactttataa gtcgtgaggg ttcaagtccc
601 tctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
609 |
590 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.