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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM592145.1 nt Razafimandimbisonia humblotii vouch... 1692 bp Razafimandimbisonia humblotii QL-PLN-00-007 559 bp View
KM592146.1 nt Robbrechtia grandifolia voucher Kar... 1667 bp Robbrechtia grandifolia QL-PLN-00-007 567 bp View
KM592147.1 nt Robbrechtia milleri voucher Bremer ... 1667 bp Robbrechtia milleri QL-PLN-00-007 567 bp View
KM592148.1 nt Rutidea decorticata voucher Maurin ... 1684 bp Rutidea decorticata QL-PLN-00-007 571 bp View
KM592149.1 nt Rutidea dupuisii voucher Dessein et... 1670 bp Rutidea dupuisii QL-PLN-00-007 571 bp View
KM592150.1 nt Rutidea ferruginea voucher Dessein ... 1672 bp Rutidea ferruginea QL-PLN-00-007 571 bp View
KM592151.1 nt Rutidea fuscescens voucher Luke & a... 1650 bp Rutidea fuscescens QL-PLN-00-007 571 bp View
KM592152.1 nt Rutidea membranacea voucher Adam 21... 1653 bp Rutidea membranacea QL-PLN-00-007 571 bp View
KM592153.1 nt Rutidea olenotricha voucher Schmidt... 1666 bp Rutidea olenotricha QL-PLN-00-007 571 bp View
KM592154.1 nt Rutidea parviflora voucher Adam 201... 1671 bp Rutidea parviflora QL-PLN-00-007 570 bp View
KM592155.1 nt Rutidea seretii voucher Gereau 5588... 1652 bp Rutidea seretii QL-PLN-00-007 571 bp View
KM592156.1 nt Schizenterospermum grevei voucher D... 1669 bp Schizenterospermum grevei QL-PLN-00-007 567 bp View
KM592157.1 nt Schizenterospermum rotundifolium vo... 1669 bp Schizenterospermum rotundifolium QL-PLN-00-007 569 bp View
KM592158.1 nt Tarenna alpestris voucher De Block ... 1658 bp Tarenna alpestris QL-PLN-00-007 565 bp View
KM592159.1 nt Tarenna asiatica voucher Auroville ... 1695 bp Tarenna asiatica QL-PLN-00-007 567 bp View
KM592163.1 nt Tarenna flava voucher Klackenberg 4... 1719 bp Tarenna flava QL-PLN-00-007 567 bp View
KM592164.1 nt Tarenna fusco-flava voucher Schmidt... 1664 bp Tarenna fuscoflava QL-PLN-00-007 567 bp View
KM592165.1 nt Tarenna gracilipes voucher Van Caek... 1679 bp Tarenna gracilipes QL-PLN-00-007 567 bp View
KM592166.1 nt Tarenna jolinonii voucher Champluvi... 1669 bp Tarenna jolinonii QL-PLN-00-007 567 bp View
KM592167.1 nt Tarenna lasiorhachis voucher Wierin... 1663 bp Tarenna lasiorhachis QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.