Match details
Record ID: |
KM592158.1 |
Database: |
nt |
Go to original record |
Description: |
Tarenna alpestris voucher De Block 1474 (BR) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tarenna alpestris |
Original size: |
1658 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
730 |
1294 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 actcactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaagg ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcattagtag agaaatcttt ccatctaaaa ttacgaaagg
251 gtaaagtgaa ggataaacgt atatacgtat tgaatactat gtcaaatgat
301 taatgacgac tcgactgaat ctgtattttt tatatgaaaa cggaagaatt
351 ggtgtaaata gattccacat tgaagaaaga atcgaatatt cattgatcaa
401 atgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451 cgagaataaa gatagagtcc tgttctacat gtcaatgtcg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.