Match details
Record ID: |
KM592145.1 |
Database: |
nt |
Go to original record |
Description: |
Razafimandimbisonia humblotii voucher Tosh & al 263 (BR) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Razafimandimbisonia humblotii |
Original size: |
1692 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
771 |
1329 |
+ |
559 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcataa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251 ataaagtaac gtatatatac gtattgaata ctatatcaaa tgattaatga
301 ggactcgact gaatctgtat tttttatatg aaaacggaag aattggtgtg
351 aatagattcc acattgaaga aagaatcgaa tattcattga tcaaatgatt
401 cactccatag tctgatagat cttttcaaga attgattaat cggacgagaa
451 taaagataga gtcccattct acatgtcaat gtcggcaaca attaaattta
501 tagtaaaagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
551 tctatcccc
View other 8 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.52e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
559 |
540 |
2.52e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.