Match details
Record ID: |
KM592157.1 |
Database: |
nt |
Go to original record |
Description: |
Schizenterospermum rotundifolium voucher De Block & al 771 (BR) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Schizenterospermum rotundifolium |
Original size: |
1669 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
737 |
1305 |
+ |
569 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 actcactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggggttcag
151 aaagtgaaaa ggggataggt gcagagactc aacggaagct gttctaacaa
201 atggagttgg ctgcattagt agagaaatct ttccatctaa aattccgaaa
251 gggtaaagtg aaggataaac gtatatatac gtattgaata ctatgtcaaa
301 tgattaatga cgactcgact gaatctgtat tttttatatg aaaacggaag
351 aattggtgtg aatagattcc acattgaaga aagaatcgaa tattcattga
401 tcaaatgatt cactccatag tctgatagat cttttcaaga attgattaat
451 cggacgagaa taaagataga gtcctgttct acatgtcaat gtcggcaaca
501 atgaaattta tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg
551 ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
569 |
550 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.