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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815406.1 nt Bertiera borbonica voucher Kainulai... 1699 bp Bertiera borbonica QL-PLN-00-007 569 bp View
KJ815408.1 nt Bertiera crinita voucher Bremer et ... 1696 bp Bertiera crinita QL-PLN-00-007 569 bp View
KJ815409.1 nt Bertiera pauloi voucher Luke et al.... 1508 bp Bertiera pauloi QL-PLN-00-007 567 bp View
KJ815411.1 nt Bertiera rufa voucher Kainulainen e... 1637 bp Bertiera rufa QL-PLN-00-007 569 bp View
KJ815412.1 nt Bertiera sp. Persson & Gustavsson 2... 1690 bp Bertiera sp. Persson & Gustavsson 293 QL-PLN-00-007 569 bp View
KJ815413.1 nt Bertiera subsessilis voucher Walter... 1687 bp Bertiera subsessilis QL-PLN-00-007 567 bp View
KJ815414.1 nt Bertiera zaluzania voucher Kroger e... 1677 bp Bertiera zaluzania QL-PLN-00-007 569 bp View
KJ815415.1 nt Calycosiphonia spathicalyx voucher ... 1720 bp Calycosiphonia spathicalyx QL-PLN-00-007 565 bp View
KJ815416.1 nt Diplospora dubia voucher Kainulaine... 1680 bp Diplospora dubia QL-PLN-00-007 564 bp View
KJ815417.1 nt Sericanthe andongensis voucher Brem... 1751 bp Sericanthe andongensis QL-PLN-00-007 565 bp View
KJ815418.1 nt Coffea boiviniana voucher Bremer et... 1670 bp Coffea boiviniana QL-PLN-00-007 570 bp View
KJ815419.1 nt Coffea buxifolia voucher Razafimand... 1662 bp Coffea buxifolia QL-PLN-00-007 570 bp View
KJ815420.1 nt Coffea canephora trnT-trnL intergen... 1677 bp Coffea canephora QL-PLN-00-007 571 bp View
KJ815421.1 nt Coffea commersoniana voucher Kainul... 1663 bp Coffea commersoniana QL-PLN-00-007 570 bp View
KJ815422.1 nt Coffea dubardii voucher Karehed et ... 1678 bp Coffea dubardii QL-PLN-00-007 570 bp View
KJ815423.1 nt Coffea grevei voucher Kainulainen e... 1604 bp Coffea grevei QL-PLN-00-007 570 bp View
KJ815424.1 nt Coffea humbertii voucher Razafimand... 1610 bp Coffea humbertii QL-PLN-00-007 570 bp View
KJ815425.1 nt Coffea humblotiana voucher Mouly 71... 1641 bp Coffea humblotiana QL-PLN-00-007 570 bp View
KJ815427.1 nt Coffea macrocarpa voucher Razafiman... 1686 bp Coffea macrocarpa QL-PLN-00-007 570 bp View
KJ815428.1 nt Coffea mangoroensis voucher Razakam... 1707 bp Coffea mangoroensis QL-PLN-00-007 569 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.