Match details
Record ID: |
KJ815420.1 |
Database: |
nt |
Go to original record |
Description: |
Coffea canephora trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL-UAA) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Coffea canephora |
Original size: |
1677 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
768 |
1338 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151 cagaaagtga aaaaaaggat aggtgcagag actcaacgga agctgttcta
201 acaaatggag ttggctgcgt tagtagagaa atctttccat ctaaaattcc
251 gaaaggataa agtgaaggat aaacgtatat acgtattgaa tactatatca
301 aatgattaat gacgactcaa ctgaatctgt attttttata taaaaatgga
351 agaattggtg tgaatagatt ccacattgaa gaaagaatcg aatattcatt
401 gatcaaacga ttcactccat agtctgatag atcttttcaa gaattgatta
451 atcggacgag aataaagata gagtcccgtt ctacatgtca atgtcggcaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.