Amplicon details |
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Amplicon: |
571 bp | |
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa 51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa 101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt 151 cagaaagtga aaaaaaggat aggtgcagag actcaacgga agctgttcta 201 acaaatggag ttggctgcgt tagtagagaa atctttccat ctaaaattcc 251 gaaaggataa agtgaaggat aaacgtatat acgtattgaa tactatatca 301 aatgattaat gacgactcaa ctgaatctgt attttttata taaaaatgga 351 agaattggtg tgaatagatt ccacattgaa gaaagaatcg aatattcatt 401 gatcaaacga ttcactccat agtctgatag atcttttcaa gaattgatta 451 atcggacgag aataaagata gagtcccgtt ctacatgtca atgtcggcaa 501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag 551 ggttcaagtc cctctatccc c |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| MW970411.1 | nt | Coffea liberica chloroplast, comple... | 154799 bp | Coffea liberica | QL-PLN-00-007 | 571 bp | View |
| OQ946698.1 | nt | Coffea liberica var. dewevrei plast... | 154814 bp | Coffea liberica var. dewevrei | QL-PLN-00-007 | 571 bp | View |
| KJ815420.1 | nt | Coffea canephora trnT-trnL intergen... | 1677 bp | Coffea canephora | QL-PLN-00-007 | 571 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.