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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KC414278.1 nt Salvia azurea var. grandiflora isol... 890 bp Salvia azurea var. grandiflora QL-PLN-00-007 531 bp View
KC414279.1 nt Salvia castanea isolate 511190005 t... 888 bp Salvia castanea QL-PLN-00-007 529 bp View
KC414280.1 nt Salvia cavaleriei isolate 511190006... 905 bp Salvia cavaleriei QL-PLN-00-007 561 bp View
KC414281.1 nt Salvia coccinea isolate 511190008 t... 912 bp Salvia coccinea QL-PLN-00-007 564 bp View
KC414282.1 nt Salvia cyclostegia isolate 51119000... 888 bp Salvia cyclostegia QL-PLN-00-007 529 bp View
KC414283.1 nt Salvia digitaloides isolate 5111900... 888 bp Salvia digitaloides QL-PLN-00-007 529 bp View
KC414284.1 nt Salvia flava var. megalantha isolat... 888 bp Salvia flava var. megalantha QL-PLN-00-007 529 bp View
KC414285.1 nt Salvia guaranitica isolate 51119001... 912 bp Salvia guaranitica QL-PLN-00-007 564 bp View
KC414286.1 nt Salvia hylocharis isolate 511190014... 888 bp Salvia hylocharis QL-PLN-00-007 529 bp View
KC414287.1 nt Salvia kiaometiensis f. pubescens i... 888 bp Salvia kiaometiensis f. pubescens QL-PLN-00-007 529 bp View
KC414288.1 nt Salvia miltiorrhiza isolate 5111900... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
KC414289.1 nt Salvia miltiorrhiza isolate 5111900... 889 bp Salvia miltiorrhiza QL-PLN-00-007 530 bp View
KC414290.1 nt Salvia miltiorrhiza isolate 5111900... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
KC414292.1 nt Salvia miltiorrhiza isolate 5111900... 889 bp Salvia miltiorrhiza QL-PLN-00-007 530 bp View
KC414294.1 nt Salvia miltiorrhiza isolate 5111900... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
KC414296.1 nt Salvia officinalis isolate 51119003... 888 bp Salvia officinalis QL-PLN-00-007 529 bp View
KC414297.1 nt Salvia paohsingensis isolate 511190... 889 bp Salvia paohsingensis QL-PLN-00-007 530 bp View
KC414298.1 nt Salvia pauciflora isolate 511190033... 888 bp Salvia pauciflora QL-PLN-00-007 529 bp View
KC414299.1 nt Salvia pauciflora isolate 511190032... 888 bp Salvia pauciflora QL-PLN-00-007 529 bp View
KC414300.1 nt Salvia plebeia isolate 511190034 tR... 888 bp Salvia plebeia QL-PLN-00-007 529 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.