Match details
Record ID: |
KC414281.1 |
Database: |
nt |
Go to original record |
Description: |
Salvia coccinea isolate 511190008 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Salvia coccinea |
Original size: |
912 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
564 |
+ |
564 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt ctcaaacaaa acaaaggttc
151 aaaaaacgaa aaacaaggga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttgactgcg ccggtagagg aatttttcca cggaaacttt
251 agaaaggatg aaggataaac gcacctattg aatactatat caaatgatta
301 ataatgacta atgttgaccc caatctgttt tttaatatga aaatggaaaa
351 atcgatgtga atttatttcg cgttgaagaa taaatcgaat attcatcaac
401 tcattcactc catagttcga tagatctttt aaagaactta ttaatcggac
451 gagaataaag atagagtccc attctacatg tcaataccgg caacaatgaa
501 atttatagta agaggaagat ccgtcgactt taaaaatcgt gagggttcaa
551 gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
564 |
545 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.