Match details
Record ID: |
KC414280.1 |
Database: |
nt |
Go to original record |
Description: |
Salvia cavaleriei isolate 511190006 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Salvia cavaleriei |
Original size: |
905 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
561 |
+ |
561 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151 aacgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201 acaaatggag ttgactgcgc cggtagagga atctttccat ggaaacttta
251 gaaaggatga aggataaacg cacctattga atactatatc aaatgattaa
301 tgttgacccg aatctgtttt tttaatatga aaatggaaaa ataggtgtga
351 atttatttca cgttgaagaa taaatcgaat attcctcaac tcattcactc
401 catagtccga tagatctttt aaagaactta ttaatcggac gagaataaag
451 atagagtccc attctacatg ctacatgtca ataccggcaa caatgaaatt
501 tatggtaaga ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc
551 cctctatccc c
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
561 |
542 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.