JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

561 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151   aacgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201   acaaatggag ttgactgcgc cggtagagga atctttccat ggaaacttta
251   gaaaggatga aggataaacg cacctattga atactatatc aaatgattaa
301   tgttgacccg aatctgtttt tttaatatga aaatggaaaa ataggtgtga
351   atttatttca cgttgaagaa taaatcgaat attcctcaac tcattcactc
401   catagtccga tagatctttt aaagaactta ttaatcggac gagaataaag
451   atagagtccc attctacatg ctacatgtca ataccggcaa caatgaaatt
501   tatggtaaga ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc
551   cctctatccc c

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
KC414280.1	nt	Salvia cavaleriei isolate 511190006...	905 bp	Salvia cavaleriei	QL-PLN-00-007	561 bp	View
MZ636550.1	nt	Salvia officinalis chloroplast, com...	151163 bp	Salvia officinalis	QL-PLN-00-007	561 bp	View
ON641324.1	nt	Salvia officinalis isolate BPTPS083...	151163 bp	Salvia officinalis	QL-PLN-00-007	561 bp	View
ON641355.1	nt	Salvia officinalis isolate BPTPS146...	151163 bp	Salvia officinalis	QL-PLN-00-007	561 bp	View
ON641364.1	nt	Salvia officinalis isolate BPTPS165...	151164 bp	Salvia officinalis	QL-PLN-00-007	561 bp	View
ON641379.1	nt	Salvia officinalis isolate BPTPS198...	151163 bp	Salvia officinalis	QL-PLN-00-007	561 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.