European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX047796.1 nt Prostanthera hindii voucher Washing... 1470 bp Prostanthera hindii QL-PLN-00-007 570 bp View
JX047797.1 nt Prostanthera hirtula voucher Wilson... 1466 bp Prostanthera hirtula QL-PLN-00-007 569 bp View
JX047798.1 nt Prostanthera howelliae voucher Wils... 1467 bp Prostanthera howelliae QL-PLN-00-007 569 bp View
JX047799.1 nt Prostanthera incana voucher Wilson ... 1440 bp Prostanthera incana QL-PLN-00-007 567 bp View
JX047800.1 nt Prostanthera incana voucher Wilson ... 1484 bp Prostanthera incana QL-PLN-00-007 567 bp View
JX047801.1 nt Prostanthera incisa voucher Wilson ... 1492 bp Prostanthera incisa QL-PLN-00-007 567 bp View
JX047802.1 nt Prostanthera incurvata voucher Tayl... 1472 bp Prostanthera incurvata QL-PLN-00-007 567 bp View
JX047803.1 nt Prostanthera junonis voucher Conn 4... 1462 bp Prostanthera junonis QL-PLN-00-007 570 bp View
JX047804.1 nt Prostanthera lasianthos voucher Wil... 1468 bp Prostanthera lasianthos QL-PLN-00-007 568 bp View
JX047805.1 nt Prostanthera lasianthos voucher Wil... 1467 bp Prostanthera lasianthos QL-PLN-00-007 568 bp View
JX047806.1 nt Prostanthera linearis voucher Wilso... 1468 bp Prostanthera linearis QL-PLN-00-007 568 bp View
JX047807.1 nt Prostanthera aff. rotundifolia TCW-... 1483 bp Prostanthera aff. rotundifolia TCW-2013 QL-PLN-00-007 567 bp View
JX047808.1 nt Prostanthera magnifica voucher Wils... 1460 bp Prostanthera magnifica QL-PLN-00-007 568 bp View
JX047809.1 nt Prostanthera marifolia voucher Conn... 1461 bp Prostanthera marifolia QL-PLN-00-007 570 bp View
JX047810.1 nt Prostanthera melissifolia voucher W... 1483 bp Prostanthera melissifolia QL-PLN-00-007 567 bp View
JX047811.1 nt Prostanthera monticola voucher Wils... 1457 bp Prostanthera monticola QL-PLN-00-007 567 bp View
JX047812.1 nt Prostanthera nivea voucher Wilson 6... 1492 bp Prostanthera nivea QL-PLN-00-007 572 bp View
JX047814.1 nt Prostanthera ovalifolia voucher Wil... 1483 bp Prostanthera ovalifolia QL-PLN-00-007 567 bp View
JX047815.1 nt Prostanthera ovalifolia voucher Ano... 1482 bp Prostanthera ovalifolia QL-PLN-00-007 567 bp View
JX047816.1 nt Prostanthera palustris voucher Wils... 1474 bp Prostanthera palustris QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.