Match details
Record ID: |
JX047809.1 |
Database: |
nt |
Go to original record |
Description: |
Prostanthera marifolia voucher Conn 4380A trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Prostanthera marifolia |
Original size: |
1461 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
605 |
1174 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaacaaa
101 aatgggtaat cctgagccaa atcccgtttt ctcaaaacaa aggtaaaggt
151 tcaaaaaacg aaaaaaaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaacaaat ggagttgact gccctgatag aggcatcttt gcatggaaac
251 ttccgaaagg atgaaggata aatgtatcta ttgaatacta tatcaaatga
301 ttaatgatgg tccgaatctg tatttgtatt ttttaatatg aaaaatggaa
351 gaagtggtgt gaattgattc cacattgaag aaaaaatcga atattcagtc
401 agcaaatgat tcactccata gtccgataga tcttttaaag aactgattaa
451 tcggacgaga ataaagatag agtcccattc tacatgtcaa taccggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.