Match details
Record ID: |
JX047808.1 |
Database: |
nt |
Go to original record |
Description: |
Prostanthera magnifica voucher Wilson 100 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Prostanthera magnifica |
Original size: |
1460 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
600 |
1167 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggtaat cctgagccaa atcccgtttt ctcaaaacaa aggtaaaagt
151 tcaaaaaaac gaaaaaaggg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgt cctggtagag gcatctttgc atggaaactt
251 ccgaaaggat gaaggataaa tgtatctatt gaatactata tcaaatgatt
301 aatgatggtc cgaatctgta tttgtatttt ttaatatgaa aaatggaaga
351 attggtgtga attgattcca cattgaagaa aaaatcaaat attcagtcag
401 caaatgattc actccatagt ccgatagatc ttttaaagaa ttgattaatc
451 ggacgagaat aaagatagag tcccattcta catgtcaata ccggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.