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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ798379.1 nt Meconopsis betonicifolia voucher Mi... 824 bp Meconopsis betonicifolia QL-PLN-00-007 599 bp View
JQ798380.1 nt Meconopsis chelidonifolia voucher L... 744 bp Cathcartia chelidoniifolia QL-PLN-00-007 601 bp View
JQ798381.1 nt Meconopsis chelidonifolia voucher Y... 744 bp Cathcartia chelidoniifolia QL-PLN-00-007 601 bp View
JQ958209.1 nt Razafimandimbisonia humblotii vouch... 1697 bp Razafimandimbisonia humblotii QL-PLN-00-007 559 bp View
JQ958210.1 nt Ixora finlaysoniana voucher BR20011... 1710 bp Ixora finlaysoniana QL-PLN-00-007 565 bp View
JQ958211.1 nt Keetia gueinzii voucher Lemaire & V... 1515 bp Keetia gueinzii QL-PLN-00-007 552 bp View
JQ958212.1 nt Keetia venosa voucher Dessein et al... 1530 bp Keetia venosa QL-PLN-00-007 552 bp View
JQ958213.1 nt Psydrax fragrantissima voucher Lema... 1628 bp Psydrax fragrantissima QL-PLN-00-007 542 bp View
JQ958214.1 nt Psydrax kraussioides voucher Dessei... 1639 bp Psydrax kraussioides QL-PLN-00-007 552 bp View
JQ958215.1 nt Psydrax livida voucher Lemaire & Ve... 1637 bp Psydrax livida QL-PLN-00-007 542 bp View
JQ958216.1 nt Psydrax locuples voucher Lemaire & ... 1649 bp Psydrax locuples QL-PLN-00-007 542 bp View
JQ958218.1 nt Psydrax parviflora voucher Dessein ... 1664 bp Psydrax parviflora QL-PLN-00-007 552 bp View
JQ958219.1 nt Afrocanthium gilfillanii voucher Le... 1757 bp Afrocanthium gilfillanii QL-PLN-00-007 559 bp View
JQ958221.1 nt Afrocanthium lactescens voucher Kuc... 1719 bp Afrocanthium lactescens QL-PLN-00-007 559 bp View
JQ958222.1 nt Bullockia pseudosetiflora voucher B... 1699 bp Bullockia pseudosetiflora QL-PLN-00-007 552 bp View
JQ958223.1 nt Bullockia setiflora voucher Lemaire... 1708 bp Bullockia setiflora QL-PLN-00-007 552 bp View
JQ958224.1 nt Peponidium sp. De Block et al 2487 ... 1710 bp Peponidium sp. De Block et al 2487 QL-PLN-00-007 552 bp View
JQ958225.1 nt Pyrostria bibracteata voucher Burro... 1713 bp Pyrostria bibracteata QL-PLN-00-007 552 bp View
JQ958228.1 nt Pygmaeothamnus chamaedendrum vouche... 1694 bp Pygmaeothamnus chamaedendrum QL-PLN-00-007 552 bp View
JQ958229.1 nt Canthium armatum voucher Lemaire & ... 1668 bp Canthium armatum QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.