Match details
Record ID:
JQ958224.1
Database:
nt
Go to original record
Description:
Peponidium sp. De Block et al 2487 voucher De Block et al 2487 (BR) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL(UAA)) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast.
Taxon:
Peponidium sp. De Block et al 2487
Original size:
1710 bp
View other 20492 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
820
1371
+
552 bp
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301 actgaatctg tattttttat atgaaaatgg aagaattggt gtgaatagat
351 tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401 tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451 agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaat
501 aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551 cc
View other 25 matches with an identical amplicon
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
20 bp
0
0
1
20
2.48e-08
primerB
100.0
20 bp
0
0
552
533
2.48e-08
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.