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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JF922131.1 nt Cedrela fissilis isolate ESVNI37 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922132.1 nt Cedrela fissilis isolate ESVNI39 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922133.1 nt Cedrela fissilis isolate GOPAL164 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922136.1 nt Cedrela fissilis isolate PBGUA203 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922137.1 nt Cedrela fissilis isolate SPIPO208 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922138.1 nt Cedrela fissilis isolate SPIPO210 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922139.1 nt Cedrela fissilis isolate PRAMA342 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922140.1 nt Cedrela fissilis isolate PRLON340 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922142.1 nt Cedrela fissilis isolate PRTBA306 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922143.1 nt Cedrela fissilis isolate RSSMA73 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922145.1 nt Cedrela fissilis isolate MTAJU28 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922146.1 nt Cedrela fissilis isolate MTCAC83 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922148.1 nt Cedrela fissilis isolate MTCOM260 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922149.1 nt Cedrela fissilis isolate MTCOM261 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922151.1 nt Cedrela fissilis isolate MTNOX168 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922153.1 nt Cedrela fissilis isolate MTPLA74 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922154.1 nt Cedrela fissilis isolate BOCOR113 t... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF951094.1 nt Phalaris aquatica isolate AQU284200... 1657 bp Phalaris aquatica QL-PLN-00-007 617 bp View
JF951105.1 nt Phalaris minor isolate MIN208404 tr... 1658 bp Phalaris minor QL-PLN-00-007 617 bp View
JF951113.1 nt Phalaris aquatica trnT-trnL interge... 1445 bp Phalaris aquatica QL-PLN-00-007 617 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.