Match details
Record ID: |
JF951113.1 |
Database: |
nt |
Go to original record |
Description: |
Phalaris aquatica trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence and trnL-trnF intergenic spacer, partial sequence. |
Taxon: |
Phalaris aquatica |
Original size: |
1445 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
548 |
1164 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtattttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatt gagttaatta cgttgtgttg ttagtggaac tccttccaaa
251 tttgagaaag aagggcttta tacatctaat aaacacgtat agatactgac
301 atacatagca aacgattaat cacagaaccc atattataat ataggttctt
351 tattcttttt tagaatgaaa ttagaaatga ttctgaaata aaaaattcag
401 aatttttttt agaattattg tgaatccatt ccaatcgaat attgagtaat
451 caaatccttc aattcaaagt tttgagatct ttaaaaaagt ggattaatcg
501 gacgaggaca aagagagagt cccattctac atgtcaatac tgacaacaat
551 gaaatttcta gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt
601 caagtccctc tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.