Match details
Record ID: |
JF922154.1 |
Database: |
nt |
Go to original record |
Description: |
Cedrela fissilis isolate BOCOR113 trnT-trnL intergenic spacer and tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Cedrela fissilis |
Original size: |
1498 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
904 |
1498 |
+ |
595 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aatcaaaaat
101 gggcaatcct gagccaaatc ctgttttaca agaacaaaca agcgttcaga
151 aagcgaaaaa aaagggggat aggtgcagag actcaatgga agctgttcta
201 agaaatgggg ttgactgcct tttttggtaa agaaaggaaa agaaatcctt
251 ctatcgaata tcgaaactcc ataaaggata agcgtgtata cactatgtat
301 acacaatgaa aaactatctc aaaaatgaca accgaatccg tatttttttt
351 tatgaaaaag aaaagaattg ttatgaatca attccaagtt gaagaaagaa
401 tcgaatattc attgatcaaa tcattcactc cacagtctga tcgatctttt
451 cttttgaaga actgattaat cggacaagaa taaagataga gtcccattct
501 acatgtcaat atcaataccg gcaacaatga aatttagagt aagaggaaaa
551 tccgtcgact ttagaaatcg tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
595 |
576 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.