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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 42 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HK436750.1 emblrelpat Sequence 32494 from patent US 8952217. 2480 bp unidentified QT-TAX-ZM-006 151 bp View
HK440470.1 emblrelpat Sequence 40013 from patent US 8952217. 2480 bp unidentified QT-TAX-ZM-006 151 bp View
HK452463.1 emblrelpat Sequence 64280 from patent US 8952217. 2480 bp unidentified QT-TAX-ZM-006 151 bp View
HV199243.1 emblrelpat JP 2001505412-A/7: Encapsulation of... 2097 bp Zea mays QT-TAX-ZM-006 151 bp View
HW430035.1 emblrelpat JP 2014033658-A/11: A method for pr... 151 bp Zea mays QT-TAX-ZM-006 151 bp View
HW430049.1 emblrelpat JP 2014033658-A/25: A method for pr... 874 bp synthetic construct QT-TAX-ZM-006 151 bp View
HW430050.1 emblrelpat JP 2014033658-A/26: A method for pr... 3572 bp synthetic construct QT-TAX-ZM-006 151 bp View
HW467463.1 emblrelpat WO 2014024493-A/11: A method for pr... 151 bp Zea mays QT-TAX-ZM-006 151 bp View
HW467477.1 emblrelpat WO 2014024493-A/25: A method for pr... 874 bp synthetic construct QT-TAX-ZM-006 151 bp View
HW467478.1 emblrelpat WO 2014024493-A/26: A method for pr... 3572 bp synthetic construct QT-TAX-ZM-006 151 bp View
LF150280.1 emblrelpat JP 2016511002-A/48: SYSTEM AND METH... 2480 bp Zea mays QT-TAX-ZM-006 151 bp View
LG111063.1 emblrelpat KR 1020150128953-A/48: SYSTEM AND M... 2480 bp Zea mays QT-TAX-ZM-006 151 bp View
LQ016353.1 emblrelpat Sequence 48 from Patent EP2971150. 2480 bp Zea mays QT-TAX-ZM-006 151 bp View
MI867740.1 emblrelpat Sequence 48 from patent US 10017828. 2480 bp unidentified QT-TAX-ZM-006 151 bp View
NRN_AR106493 nrnl1 Sequence 10 from patent US 6107060.... 2097 bp unidentified QT-TAX-ZM-006 151 bp View
NRN_BD170160 nrnl1 Method of quantifying gene modifica... 1102 bp unidentified QT-TAX-ZM-006 151 bp View
NRN_BD170161 nrnl1 Method of quantifying gene modifica... 1071 bp unidentified QT-TAX-ZM-006 151 bp View
NRN_BD295580 nrnl1 Nucleic acid fragment for competiti... 1135 bp unidentified QT-TAX-ZM-006 172 bp View
NRN_EA306374 nrnl1 Sequence 52 from patent US 7285703.... 2423 bp unidentified QT-TAX-ZM-006 151 bp View
NRN_GX326062 nrnl1 Sequence 20137 from patent US 7750207. 2826 bp unidentified QT-TAX-ZM-006 151 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.