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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
GX931306.1 emblrelpat Sequence 27214 from patent US 7868149. 13945 bp unidentified QL-PLN-00-007 615 bp View
GX932336.1 emblrelpat Sequence 28244 from patent US 7868149. 14535 bp unidentified QL-PLN-00-007 615 bp View
GX932470.1 emblrelpat Sequence 28378 from patent US 7868149. 1231 bp unidentified QL-PLN-00-007 615 bp View
GX933219.1 emblrelpat Sequence 29127 from patent US 7868149. 7604 bp unidentified QL-PLN-00-007 615 bp View
GX934230.1 emblrelpat Sequence 30138 from patent US 7868149. 47474 bp unidentified QL-PLN-00-007 615 bp View
GX936024.1 emblrelpat Sequence 31932 from patent US 7868149. 48874 bp unidentified QL-PLN-00-007 615 bp View
GX938151.1 emblrelpat Sequence 34059 from patent US 7868149. 11568 bp unidentified QL-PLN-00-007 615 bp View
GX940029.1 emblrelpat Sequence 35937 from patent US 7868149. 4745 bp unidentified QL-PLN-00-007 615 bp View
GX941094.1 emblrelpat Sequence 37002 from patent US 7868149. 7553 bp unidentified QL-PLN-00-007 615 bp View
GX946895.1 emblrelpat Sequence 42803 from patent US 7868149. 11012 bp unidentified QL-PLN-00-007 614 bp View
GX950513.1 emblrelpat Sequence 46421 from patent US 7868149. 9948 bp unidentified QL-PLN-00-007 615 bp View
GX972464.1 emblrelpat Sequence 68372 from patent US 7868149. 13915 bp unidentified QL-PLN-00-007 615 bp View
HB645482.1 emblrelpat Sequence 9 from Patent WO2008063370. 640 bp Zea mays QL-PLN-00-007 532 bp View
HF567870.1 nt Tectona grandis complete chloroplas... 153943 bp Tectona grandis QL-PLN-00-007 556 bp View
HF567871.1 nt Tectona grandis complete chloroplas... 153943 bp Tectona grandis QL-PLN-00-007 556 bp View
HF586694.1 nt Salvia miltiorrhiza chloroplast com... 151332 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
HF677508.1 nt Musa acuminata subsp. malaccensis c... 169972 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
HG008943.1 nt Myrtus communis var. communis chlor... 577 bp Myrtus communis var. communis QL-PLN-00-007 577 bp View
HG515539.2 nt Orobanche californica chloroplast c... 123739 bp Aphyllon californicum QL-PLN-00-007 557 bp View
HG795069.1 nt Lapeirousia sandersonii chloroplast... 737 bp Afrosolen sandersonii QL-PLN-00-007 550 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.