Match details
Record ID: |
HG795069.1 |
Database: |
nt |
Go to original record |
Description: |
Lapeirousia sandersonii chloroplast DNA containing partial trnL gene, trnL-trnF IGS and partial trnF gene, isolate GM9806 |
Taxon: |
Afrosolen sandersonii |
Original size: |
737 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
551 |
+ |
550 bp |
|
1 cgaaatcggt agacgctacg gacttgattg aattgagcct tagtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aaaaaaaggg
101 gggcaatcct gagccaaatc tttattttga gaaaacaaaa actagaataa
151 aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa cgaatggagt
201 tgactacgtt gtgttggtag ccggaatctt tctatcgaaa tgaaagataa
251 ggatatacct aattcgtata catattacca tatcataacg attaatcatg
301 acccaaatcc attatatata tatgcaaaat ggggagttat tgcggatcta
351 ttccaatcga gaagaatcga atattcggtg atcaaatcta tcattccaga
401 gtttgataga tcttttgaaa aatggattaa tcgtaagaga ataaagagag
451 agtcccattc tacatgtcaa taacgacaac aatgaaattt atagtaaaag
501 gaaaatccgt cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
550 |
531 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.