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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR689490.1 nt Bothriochloa ischaemum tRNA-Leu (tr... 530 bp Bothriochloa ischaemum QL-PLN-00-007 530 bp View
OR699041.1 nt Prostanthera althoferi subsp. altho... 152865 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699042.1 nt Prostanthera althoferi subsp. altho... 152886 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699043.1 nt Prostanthera althoferi subsp. altho... 152942 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699044.1 nt Prostanthera wilkieana voucher PW M... 152841 bp Prostanthera wilkieana QL-PLN-00-007 571 bp View
OR699046.1 nt Prostanthera althoferi subsp. altho... 152878 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699049.1 nt Prostanthera althoferi subsp. altho... 152871 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699050.1 nt Prostanthera althoferi subsp. altho... 152946 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699051.1 nt Prostanthera althoferi subsp. altho... 152928 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699052.1 nt Prostanthera althoferi subsp. altho... 152870 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699053.1 nt Prostanthera althoferi subsp. altho... 152937 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR723982.1 nt Fritillaria usuriensis isolate HLJY... 151525 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
OR723983.1 nt Fritillaria usuriensis isolate HLJG... 151527 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
OR723984.1 nt Fritillaria usuriensis isolate HLJY... 151515 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
OR723985.1 nt Fritillaria usuriensis isolate JLPS... 151542 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
OR723986.1 nt Fritillaria usuriensis isolate LNFS... 151548 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
OR726992.1 nt Eremophila magnifica subsp. velutin... 151742 bp Eremophila magnifica subsp. velutina QL-PLN-00-007 557 bp View
OR726993.1 nt Eremophila magnifica subsp. velutin... 151757 bp Eremophila magnifica subsp. velutina QL-PLN-00-007 557 bp View
OR726994.1 nt Eremophila magnifica subsp. magnifi... 151766 bp Eremophila magnifica subsp. magnifica QL-PLN-00-007 557 bp View
OR726995.1 nt Eremophila magnifica subsp. velutin... 151761 bp Eremophila magnifica subsp. velutina QL-PLN-00-007 557 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.