Match details
Record ID: |
OR699049.1 |
Database: |
nt |
Go to original record |
Description: |
Prostanthera althoferi subsp. althoferi voucher PBS LEIN 2 isolate BMR06612 chloroplast, complete genome. |
Taxon: |
Prostanthera althoferi subsp. althoferi |
Original size: |
152871 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48045 |
48613 |
+ |
569 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggtaat cctgagccaa atcccgtttt ctcaaaacaa aggtaaaggt
151 tcaaaaaacg aaaaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttgattgcc ctggtagagg catctttgca tggaaacttc
251 cgaaaggatg aaggataaat gtatctattg aatactatat cattaatgat
301 taatgatggt ccgaatctgt atttgtattt tttaatatga aaaatgtaag
351 aattgatgtg aattgattcc acattgaaga aaaaatcgaa tattcagtca
401 gcaaatgatt cactccatag tccaatagat cttttaaaga actgattaat
451 cggacgagaa taaagataga gtcccattct acatgtcaat accggcaaca
501 atgaaattta tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg
551 ttcaagtccc tctatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
569 |
550 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.