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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR260127.1 nt Hemerocallis citrina isolate 47 chl... 156053 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260128.1 nt Hemerocallis hybrid cultivar cultiv... 156034 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260129.1 nt Hemerocallis hybrid cultivar cultiv... 156110 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260130.1 nt Hemerocallis hybrid cultivar cultiv... 156083 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260131.1 nt Hemerocallis hybrid cultivar cultiv... 156060 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260132.1 nt Hemerocallis hybrid cultivar cultiv... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260133.1 nt Hemerocallis hybrid cultivar cultiv... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260134.1 nt Hemerocallis hybrid cultivar cultiv... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260135.1 nt Hemerocallis sp. isolate 72 cultiva... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260136.1 nt Hemerocallis hybrid cultivar cultiv... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260137.1 nt Hemerocallis hybrid cultivar cultiv... 155983 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260138.1 nt Hemerocallis hybrid cultivar cultiv... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260139.1 nt Hemerocallis hybrid cultivar cultiv... 156057 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260140.1 nt Hemerocallis hybrid cultivar cultiv... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260141.1 nt Hemerocallis hybrid cultivar cultiv... 156127 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260142.1 nt Hemerocallis hybrid cultivar cultiv... 156060 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260143.1 nt Hemerocallis hybrid cultivar cultiv... 156110 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260144.1 nt Hemerocallis sp. isolate 87 cultiva... 156053 bp Hemerocallis hybrid cultivar QL-PLN-00-007 584 bp View
OR260145.1 nt Hemerocallis hybrid cultivar cultiv... 156117 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260146.1 nt Hemerocallis hybrid cultivar cultiv... 155837 bp Hemerocallis hybrid cultivar QL-PLN-00-007 585 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.