Match details
Record ID: |
OR260142.1 |
Database: |
nt |
Go to original record |
Description: |
Hemerocallis hybrid cultivar cultivar Hongbao isolate 84 chloroplast, partial genome. |
Taxon: |
Hemerocallis hybrid cultivar |
Original size: |
156060 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47995 |
48578 |
+ |
584 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aactaaaaat
101 gggcaatcct gagccaaatc tttttttttc aaaaaaggtt tttttttgaa
151 actcgaataa aaaaagatag gtgcagagac tcaatggaag ctgttctaac
201 gaatggagtt gactacgttg tgttggtagc cggaatcctt ctatcgaaat
251 taaaaaaagg atgactatat atctaataaa tacgtataca tactgacata
301 tcaaacgatt aatcatgacc cgaattagta ttatatatat gcaaaattca
351 gagttattgt ggatctattc caatcgaagt tgaaggaaga acagaatatt
401 taatgatcaa atcattcatt ccagggtttg ataggccttt actttttttt
451 gacaaactga ttaatcggac gagaataaag agagagtccc attctacatg
501 tcaataccga caacaatgaa atttatagta agaggaaaat ccgtcgactt
551 taaaaatcgt gagggttcaa gtccctctat cccc
View other 17 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
584 |
565 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.