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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR260107.1 nt Hemerocallis citrina cultivar Panlo... 156089 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260108.1 nt Hemerocallis citrina cultivar Liuyu... 156089 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260109.1 nt Hemerocallis minor isolate 7 chloro... 156089 bp Hemerocallis minor QL-PLN-00-007 584 bp View
OR260110.1 nt Hemerocallis lilioasphodelus isolat... 156051 bp Hemerocallis lilioasphodelus QL-PLN-00-007 584 bp View
OR260111.1 nt Hemerocallis citrina isolate 11 cul... 156075 bp Hemerocallis citrina QL-PLN-00-007 585 bp View
OR260112.1 nt Hemerocallis citrina isolate 18 cul... 156110 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260113.1 nt Hemerocallis citrina cultivar Dali ... 156088 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260114.1 nt Hemerocallis citrina cultivar Baihu... 156100 bp Hemerocallis citrina QL-PLN-00-007 586 bp View
OR260115.1 nt Hemerocallis hybrid cultivar isolat... 156184 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260116.1 nt Hemerocallis hybrid cultivar isolat... 156120 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260117.1 nt Hemerocallis citrina cultivar Xianh... 156089 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260118.1 nt Hemerocallis citrina isolate 29 cul... 156088 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260119.1 nt Hemerocallis citrina isolate 30 cul... 155877 bp Hemerocallis citrina QL-PLN-00-007 586 bp View
OR260120.1 nt Hemerocallis citrina cultivar Gaoti... 156110 bp Hemerocallis citrina QL-PLN-00-007 586 bp View
OR260121.1 nt Hemerocallis fulva cultivar Golden ... 156144 bp Hemerocallis fulva QL-PLN-00-007 586 bp View
OR260122.1 nt Hemerocallis citrina isolate 39 cul... 156088 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260123.1 nt Hemerocallis fulva var. aurantiaca ... 156117 bp Hemerocallis fulva var. aurantiaca QL-PLN-00-007 586 bp View
OR260124.1 nt Hemerocallis middendorffii isolate ... 156107 bp Hemerocallis middendorffii QL-PLN-00-007 584 bp View
OR260125.1 nt Hemerocallis multiflora isolate 45 ... 155919 bp Hemerocallis multiflora QL-PLN-00-007 586 bp View
OR260126.1 nt Hemerocallis altissima isolate 46 c... 156119 bp Hemerocallis altissima QL-PLN-00-007 584 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.