Match details
Record ID: |
OR260115.1 |
Database: |
nt |
Go to original record |
Description: |
Hemerocallis hybrid cultivar isolate 22 chloroplast, partial genome. |
Taxon: |
Hemerocallis hybrid cultivar |
Original size: |
156184 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47993 |
48578 |
+ |
586 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aactaaaaat
101 gggcaatcct gagccaaatc tttttttttc aaaaaaggtt tttttttgaa
151 actcgaataa aaaaagatag gtgcagagac tcaatggaag ctgttctaac
201 gaatggagtt gactacgttg tgttggtagc cggaatcctt ctatcgaaat
251 tcaaaaaagg atgactatat atctaataca tacgtataca tactgacata
301 tcaaacgatt aatcatgacc cgaattagta ttatatatat atgcaaaatt
351 cagagttatt gtggatctat tccaatcgaa gttgaaggaa gaacagaata
401 tttaatgatc aaatcattca ttccagggtt tgataggcct ttactttttt
451 ttgacaaact gattaatcgg acgagaataa agagagagtc ccattctaca
501 tgtcaatacc gacaacaatg aaatttatag taagaggaaa atccgtcgac
551 tttaaaaatc gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
586 |
567 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.