Match details
Record ID: |
OR260111.1 |
Database: |
nt |
Go to original record |
Description: |
Hemerocallis citrina isolate 11 cultivar Guangling chloroplast, complete genome. |
Taxon: |
Hemerocallis citrina |
Original size: |
156075 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48011 |
48595 |
+ |
585 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aactaaaaat
101 gggcaatcct gagccaaatc tttttttttc aaaaaaggtt ttttttttga
151 aactcgaata aaaaaagata ggtgcagaga ctcaatggaa gctgttctaa
201 cgaatggagt tgactacgtt gtgttggtag ccggaatcct tctatcgaaa
251 ttaaaaaaag gatgactata tatctaataa atacgtatac atactgacat
301 atcaaacgat taatcatgac ccgaattagt attatatata tgcaaaattc
351 agagttattg tggatctatt ccaatcgaag ttgaaggaag aacagaatat
401 ttaatgatca aatcattcat tccagggttt gataggcctt tacttttttt
451 tgacaaactg attaatcgga cgagaataaa gagagagtcc cattctacat
501 gtcaataccg acaacaatga aatttatagt aagaggaaaa tccgtcgact
551 ttaaaaatcg tgagggttca agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
585 |
566 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.