European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ873399.1 nt Panicum virgatum chloroplast, compl... 139746 bp Panicum virgatum QL-PLN-00-007 614 bp View
OQ873400.1 nt Panicum virgatum chloroplast, compl... 139594 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873401.1 nt Panicum virgatum chloroplast, compl... 139561 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873402.1 nt Panicum virgatum chloroplast, compl... 139586 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873403.1 nt Panicum virgatum chloroplast, compl... 139586 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873404.1 nt Panicum virgatum chloroplast, compl... 139578 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873405.1 nt Panicum virgatum chloroplast, compl... 139560 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873406.1 nt Panicum virgatum chloroplast, compl... 139610 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873407.1 nt Panicum virgatum chloroplast, compl... 139577 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873408.1 nt Panicum virgatum chloroplast, compl... 139676 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873409.1 nt Panicum virgatum chloroplast, compl... 139550 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873410.1 nt Panicum virgatum chloroplast, compl... 139588 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873411.1 nt Panicum virgatum chloroplast, compl... 139551 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873412.1 nt Panicum virgatum chloroplast, compl... 139630 bp Panicum virgatum QL-PLN-00-007 614 bp View
OQ873413.1 nt Panicum virgatum chloroplast, compl... 139550 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ873414.1 nt Panicum virgatum chloroplast, compl... 139561 bp Panicum virgatum QL-PLN-00-007 565 bp View
OQ909432.1 nt Scutellaria franchetiana chloroplas... 151852 bp Scutellaria franchetiana QL-PLN-00-007 551 bp View
OQ909433.1 nt Scutellaria barbata chloroplast, co... 152050 bp Scutellaria barbata QL-PLN-00-007 550 bp View
OQ935426.1 nt Lolium arundinaceum cultivar Resolu... 135324 bp Lolium arundinaceum QL-PLN-00-007 618 bp View
OQ942922.1 nt Vitex rotundifolia chloroplast, com... 154446 bp Vitex rotundifolia QL-PLN-00-007 559 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.