JRC GMO-Amplicons | EURL GMFF

Record ID:	OQ909432.1
Database:	nt	Go to original record
Description:	Scutellaria franchetiana chloroplast, complete genome.
Taxon:	Scutellaria franchetiana
Original size:	151852 bp

Method:	QL-PLN-00-007	Go to GMOMETHODS record
		View in JRC GMO-Matrix
Description:	Qualitative PCR method for detection of chloroplast tRNA-Leu intron (ISO/FDIS 21569:2005).
Target:	chloroplast tRNA-Leu (trnL) intron

View other 20492 matches for this method

Predicted amplification details:

Mismatches	Gaps	From	To	Strand	Amplicon size
0	0	47627	48177	+	551 bp

Amplicon:

551 bp

1     cgaaatcggt agacgctacg gacttaatta gattgagcct tgatgtggga
51    aacctactaa gtgataactt tcaaattcag agaaaccccg gaattaataa
101   aaatgggtga tcctgatcca aatcctgttt tctgaaaaca aaggctcaaa
151   aaacgaaaaa tgggataggt gcagagactc gatggaagct gttctaacaa
201   atggagttag ctgcgttgtt agaggaatcc tttccgcgga aacttcagaa
251   aggataaacg tatctattga atactatatc aaatgattaa tgatggcccg
301   aatctgtatt tttgaatatg aaaaacggaa gaatcggtgt gaattgattc
351   cacattgaaa aaaaaaatgg aatattcatt catcaaatca ttcactccac
401   ggtccaatag gtcttttaaa gaactaatta atcggacgag aataaagata
451   gagtcccatt ctacatgtca ataccggcaa caatgaaatt tatagtaaga
501   ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc cctctatccc
551   c

View other 1 match with an identical amplicon

Primers alignment:

Primer/Probe	% Identity	Length	Mismatches	Gaps	From	To	Score
primerA	100.0	20 bp	0	0	1	20	2.48e-08
primerB	100.0	20 bp	0	0	551	532	2.48e-08

Match details