European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ672934.1 nt Phlomoides canescens plastid, compl... 151843 bp Phlomoides canescens QL-PLN-00-007 562 bp View
OQ672935.1 nt Phlomoides deserticola plastid, com... 151510 bp Phlomoides deserticola QL-PLN-00-007 562 bp View
OQ672936.1 nt Phlomoides pedunculata plastid, com... 152010 bp Phlomoides pedunculata QL-PLN-00-007 555 bp View
OQ672937.1 nt Phlomoides hamosa plastid, complete... 151738 bp Phlomoides hamosa QL-PLN-00-007 555 bp View
OQ672938.1 nt Phlomoides molucelloides plastid, c... 151524 bp Phlomoides molucelloides QL-PLN-00-007 562 bp View
OQ672939.1 nt Phlomoides nuda plastid, complete g... 151524 bp Phlomoides nuda QL-PLN-00-007 562 bp View
OQ672940.1 nt Phlomoides labiosissima plastid, co... 151327 bp Phlomoides labiosissima QL-PLN-00-007 562 bp View
OQ672941.1 nt Phlomoides eriocalyx plastid, compl... 150667 bp Phlomoides eriocalyx QL-PLN-00-007 562 bp View
OQ672942.1 nt Phlomoides lehmanniana plastid, com... 151114 bp Phlomoides lehmanniana QL-PLN-00-007 562 bp View
OQ672943.1 nt Phlomoides baissunensis plastid, co... 151359 bp Phlomoides baissunensis QL-PLN-00-007 562 bp View
OQ672944.1 nt Phlomoides kermanica plastid, compl... 151348 bp Phlomoides kermanica QL-PLN-00-007 562 bp View
OQ672945.1 nt Phlomoides zenaidae plastid, comple... 151596 bp Phlomoides zenaidae QL-PLN-00-007 562 bp View
OQ672946.1 nt Phlomoides atropurpurea plastid, co... 151841 bp Phlomoides atropurpurea QL-PLN-00-007 555 bp View
OQ672947.1 nt Phlomoides franchetiana plastid, co... 151927 bp Phlomoides franchetiana QL-PLN-00-007 560 bp View
OQ672948.1 nt Phlomoides labiosiformis plastid, c... 151327 bp Phlomoides labiosiformis QL-PLN-00-007 562 bp View
OQ672949.1 nt Phlomoides codonantha plastid, comp... 151298 bp Phlomoides codonantha QL-PLN-00-007 562 bp View
OQ706275.1 nt Ocimum basilicum var. basilicum chl... 152407 bp Ocimum basilicum var. basilicum QL-PLN-00-007 549 bp View
OQ743999.1 nt Tetraena mongolica plastid, complet... 106189 bp Tetraena mongolica QL-PLN-00-007 537 bp View
OQ791221.1 nt Temochloa liliana voucher Sungkaew ... 139510 bp Temochloa liliana QL-PLN-00-007 614 bp View
OQ791222.1 nt Temochloa sp. CYZ-2023b chloroplast... 139428 bp Temochloa sp. CYZ-2023b QL-PLN-00-007 614 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.