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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP262744.1 nt Brandisia scandens isolate 2 vouche... 155086 bp Brandisia scandens QL-PLN-00-007 556 bp View
OP262745.1 nt Brandisia swinglei isolate 1 vouche... 155296 bp Brandisia swinglei QL-PLN-00-007 556 bp View
OP262746.1 nt Brandisia swinglei isolate 2 vouche... 155373 bp Brandisia swinglei QL-PLN-00-007 556 bp View
OP262747.1 nt Brandisia swinglei isolate 3 vouche... 155277 bp Brandisia swinglei QL-PLN-00-007 556 bp View
OP262748.1 nt Brandisia swinglei isolate 4 vouche... 155391 bp Brandisia swinglei QL-PLN-00-007 556 bp View
OP262750.1 nt Brandisia hancei x Brandisia discol... 155225 bp Brandisia hancei x Brandisia discolor QL-PLN-00-007 556 bp View
OP262751.1 nt Brandisia hancei x Brandisia discol... 154604 bp Brandisia hancei x Brandisia discolor QL-PLN-00-007 555 bp View
OP262752.1 nt Brandisia hancei x Brandisia discol... 155231 bp Brandisia hancei x Brandisia discolor QL-PLN-00-007 556 bp View
OP271832.1 nt Schnabelia terniflora chloroplast, ... 156986 bp Schnabelia terniflora QL-PLN-00-007 551 bp View
OP328179.1 nt Themeda triandra voucher T101_Jobso... 138749 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328181.1 nt Themeda triandra voucher T105_Jobso... 138847 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328182.1 nt Themeda triandra voucher T106_Jobso... 138892 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328183.1 nt Themeda triandra voucher T107_Jobso... 138884 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328184.1 nt Themeda triandra voucher T108_Jobso... 138839 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328185.1 nt Themeda triandra voucher T109_Jobso... 138839 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328186.1 nt Themeda triandra voucher T110_Jobso... 138844 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328187.1 nt Themeda triandra voucher T111_Jobso... 138837 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328188.1 nt Themeda triandra voucher T112_Jobso... 138798 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328189.1 nt Themeda triandra voucher T113_Jobso... 138588 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328190.1 nt Themeda triandra voucher T114_Jobso... 138844 bp Themeda triandra QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.